It was supposed to be 2, but for some reason I neglected to set it when I
set up the options parsing. However, level 4 is the standard for production
maps, and it happens to be faster than level 2 (at least for gmsp3v2.bsp)
Most of the guts of configure.ac have been moved to config.d and are then
brought in by m4_include. This will make maintaining configure.ac much easier.
Also drop use of PROGRAM and VERSION, using PACKAGE_NAME, PACKAGE_VERSION, and
on occasion, PACKAGE_STRING instead, and clean out some old files we no longer
need.